Gene Transcription Regulation Database
The most complete collection of uniformly processed ChIP-seq data to identify transcription factor binding sites for human and mouse. Convenient web interface with advanced search, browsing and genome browser based on the BioUML platform. For support or any questions contact firstname.lastname@example.org
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How it was constructed?
ChIP-seq experiment information and raw data were collected from publically available sources. Sequenced reads were aligned using Bowtie2 and ChIP-seq peaks were called using 4 different methods. Peaks were merged into clusters and metaclusters to produce non-redundant set of transcription factor binding sites.Learn more »
- 5078 ChIP-seq experiments
- 542 Transcription factors
- 183 770 420 298 ChIP-seq reads
- 146 855 318 517 Reads aligned
- 296 112 088 ChIP-seq peaks
- 176 007 357 Clusters
- 30 178 267 Metaclusters
How to cite
GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments. I.S. Yevshin, R.N. Sharipov, T.F. Valeev, A.E. Kel, F.A. Kolpakov. Nucleic Acids Res. 2017 Jan 4;45(D1):D61-D67.
Users may freely use the GTRD database for non-commercial purposes as long as they properly cite it. If you intend to use GTRD for a commercial purpose, please contact email@example.com to arrange a license.